I seem to recall that Trey and Matt have stated that they do, in fact, believe in a God...so, who knows. But, in any event, the show's moral is not "Mormons are ridiculous beings". I, too, am fairly religious, but didn't take offense with the takeaway message.
Yes, of course the Tony performance's end goal is increased ticket sales, but that doesn't mean they'd hastily exclude the principals for a couple extra laughs. If it's impressive they want, I still stand by the "Man Up" finale, although (as pointed out) it probably isn't as funny out of context. And, like Ourtime, I found "Two by Two" kind of lackluster, and it features the ensemble more than Rannells and Gad to boot.
...And so, there I was at the stage door for "Equus". The enthused avalanche of "Harry Potter" fans was literally pushing me into the barricades. As I was thrust face-first into Daniel Radcliffe's hat, I suddenly felt the thumb of a lanky gentleman behind me pressing firmly into my back. It was then that I realized that both of his hands had Playbills, and that both arms were outstretched in front of me...