Though it is a difficult choice, I would still choose Will Rogers Follies. The Broadway production was quite amazing. The concept was genius and spectacularly executed in staging, book, and score. The choreography and direction were genius. It has continued to have a life in regional and dinner theatres.
I do find Once on This Island to be a close runner-up, but it did have its weak spots in the score and choreography.
The Secret Garden definitely deserved Best Score that season.
Miss Saigon had gorgeous music, but dreadful lyrics. It was an exciting show to watch, but its over-the-top melodramatic book left me somewhat empty in the end.
Another tough year was 1993. Kiss of the Spider Woman and Tommy were neck-and-neck for awards while Blood Brothers went unnoticed. I think The Goodbye Girl was thrown in as a nod to the heavy-hitters involved (and the only other qualifying musicals being Anna Karenina, Ain't Broadway Grand and My Favorite Year).
I was really rooting for Tommy or Blood Brothers for Best Musical. I love the score to Kiss of the Spider Woman, but I thought the staging was a mess. With all the bars, projections and lasers, I had a difficult time seeing the actors. I never felt as emotionally connected to the show as with Tommy or Blood Brothers. In fact, Kiss of the Spider Woman seemed to isolate its audience rather than embrace them.
"What can you expect from a bunch of seitan worshippers?" - Reginald Tresilian